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De novo genome assembly of the flatworm Macrostomum lignano

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Title De novo genome assembly of the flatworm Macrostomum lignano
Period 02 / 2010 - 02 / 2011
Status Completed
Research number OND1339587
Data Supplier NWO

Abstract

The estimated genome size of M. lignano is 600 Mb, and we are utilizing second-generation sequencing technologies (454, Illumina/Solexa, SOLiD) to produce ~60x coverage of the genome in order to generate a high quality hybrid genome assembly. We have recently generated 40x genome coverage sequencing data for M. lignano genome, and assembling this amount of data using existing genome assembly software requires a system with large amount of RAM (~200GB).

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Project leader Dr. E. Berezikov

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